PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco017401.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family WRKY
Protein Properties Length: 331aa    MW: 36738.6 Da    PI: 10.405
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco017401.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.97.7e-32264321359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  Aco017401.1 264 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLDDPSMLIVTYEGEHNHQ 321
                  9************************9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.9E-19215260IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.2E-34250322IPR003657WRKY domain
PROSITE profilePS5081130.297257323IPR003657WRKY domain
SuperFamilySSF1182901.57E-27260322IPR003657WRKY domain
SMARTSM007742.9E-39262322IPR003657WRKY domain
PfamPF031069.8E-28264321IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEEVEEANKA AVESCYRVLT LLSHSQDHPI QHKIVVAETG EAVSRFRRVA SILSNCKGHA  60
RVRTEKKPLP KFNHRIFLDF PSSTSSRLDN SQRSQFGAVS RATTAQLSPK LFIEKQPVPE  120
LDSTPKLAHF QLAPQPGPFH FQFQQHVRFQ NEVFRRAGNE ISFKIEESSR GGATASSNTN  180
RSFLSSLSVD GEAFSLIGAA PTPPDVAAAR PAPIKRKCHG KGEDGNGKCS SSGRCHCSKR  240
RKLRVKRSIK VPAISNKLAD IPPDEYSWRK YGQKPIKGSP HPRGYYKCSS MRGCPARKHV  300
ERCLDDPSML IVTYEGEHNH QRSQAQSAQT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-21255321772WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008805954.11e-127PREDICTED: protein WRKY1-like isoform X1
TrEMBLV4VV691e-107V4VV69_9R
STRINGBRADI1G14300.11e-105(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.11e-76WRKY DNA-binding protein 39